PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S14849.10
Common NameJCGZ_12430, JHL03K20.2, LOC105639741
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family AP2
Protein Properties Length: 495aa    MW: 55419.6 Da    PI: 7.3951
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S14849.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.6e-17158207155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Jcr4S14849.10 158 SQYRGVTYYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 207
                    78*******************......55************************997 PP

2AP243.86.2e-14250300155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Jcr4S14849.10 250 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 300
                    89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-15158216IPR016177DNA-binding domain
PfamPF008474.0E-9158207IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-17159215IPR001471AP2/ERF domain
CDDcd000181.34E-10159214No hitNo description
SMARTSM003805.6E-31159221IPR001471AP2/ERF domain
PROSITE profilePS5103217.794159215IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-17250310IPR016177DNA-binding domain
PfamPF008471.3E-9250300IPR001471AP2/ERF domain
CDDcd000189.00E-25250310No hitNo description
Gene3DG3DSA:3.30.730.102.2E-16251308IPR001471AP2/ERF domain
PROSITE profilePS5103215.461251308IPR001471AP2/ERF domain
SMARTSM003804.2E-31251314IPR001471AP2/ERF domain
PRINTSPR003674.6E-6252263IPR001471AP2/ERF domain
PRINTSPR003674.6E-6290310IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MWDLNDSPDQ RRDDESEGCS SQKTSLDGED DNKGKRVGSV SNSSSSXSAV VIEDGSEEED  60
HASAERGRIK KRTSKIFGFS VPREDYMDTD APVTRQFFPV EDQEMGATSA GSGGAGFPRA  120
HWVGVKFCQS ESSLASPKSV EMSQPLKKSR RGPRSRSSQY RGVTYYRRTG RWESHIWDCG  180
KQVYLGGFDT AHAAARAYDR AAIKFRGVEA DINFSIEDYE EDLKQMSNLT KEEFVHVLRR  240
QSTGFPRGSS KYRGVTLHKC GRWEARMGQF LGKKYVYLGL FDTEIEAARA YDKAAIKCNG  300
KEAVTNFDPS IYENELNSSE SSGNVAADHN LDLSLGNSAG MDQHSPSMDW RNRGIRPPKL  360
NLQRNGENDD RRREGYCETE TMQLLSQTHI QSPANEPQRF QMLHGFSPSY QIQFPSSSNG  420
GRIESGLSLC SSDNQQHQQQ QQLPRQWQSG SPASSYSQHH QLVASAAASS GFPQQIRTPQ  480
NWLQKNGFHS LLRPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0119680.0AP011968.1 Jatropha curcas DNA, clone: JHL03K20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079272.10.0PREDICTED: floral homeotic protein APETALA 2 isoform X1
SwissprotP479271e-136AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLE6NU830.0E6NU83_JATCU; JHL03K20.2 protein
STRINGVIT_07s0031g00220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37843463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-111AP2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]